rs29688401 SNP Detail

Summary

• ID
  rs29688401
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108818681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAGTAGA TCTCGTCCAC
  CACCTCGTGG TAGGTCTTGA GCTCGTAGAG CTGCACTTTG AAGTAAGGCG ACGACAGGAT
  GTTGGTGAGG ATCATGGGGT TGAGGTTCAT GGTCTTCTCG TTGCCCCACA GCGGCAGCAC
  ATTGCCCTGC TTGCCCGACA CCGCCGGCTT GGTGGCGCCG CCGCCGCCGC CACATTGCTG
  Y
  TGCTGCTGGG TCACGGCCGC GGCCGCCTGG TGCTGCGGTT GCGAGTTGCC GGTCAGCGCG
  GGGCTGTTGT TGGCCATGGT GCCGCGGCAG GAAGGAAGGA GGGCGGGCGG GAGGAGGGAG
  GCCAAGCTCG ATCGCGCTCT TCGGGACAAC GGTCCCGGAC CTACTCCATG GAAGGCCGTC
  GGGGCAAGGA GCCCGCCGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46870459	NES10705601	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29688401					SNP	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46870459	NES10705601	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108818681 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13711	CpG island 13711	within coordinates
Gm56806	predicted gene, 56806	117 bp upstream
Prpf38b	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	within coordinates
Rr77092	regulatory region 77092	within coordinates
Rr397945	regulatory region 397945	204 bp upstream
Tssr31269	transcription start site region 31269	441 bp upstream
Tssr31270	transcription start site region 31270	463 bp upstream
Tssr31271	transcription start site region 31271	1048 bp upstream
Tssr35202	transcription start site region 35202	87 bp downstream
Tssr35203	transcription start site region 35203	305 bp downstream
Tssr35204	transcription start site region 35204	322 bp downstream