rs29688490 SNP Detail

Summary

• ID
  rs29688490
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108915774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGGGGAGA AACCAGGTTA
  ATAATAGCAG TATAAACTTG GACAGGGACT GCAGCATATA AGGAACGGGT TTTAATAAAG
  AGTATGGTAT TACATCTTGC AGGGGAAACC ACACTTCTGG TTTCTATCGC TACTGGCTGA
  CTTCTGCTTT AGTGACAATA TTGCAGTAGT TACCAGGTAC TTTCAATACA ACAGATACTA
  Y
  GCATTTTACA CATAGAAACG CCACTCCATT TCCTTAGTAT AGGAACTGAG AGAAATTAAG
  TAGCTTGTTG AACTTCACTA TGGTGAAAAG AGTTAAACTG AATTTAAGGC ACTGTGTAGA
  GTAGATGCAT TCCAGCATCT CAAGCAGGTT TCTACCCAGC ACCCCCTGAA ACTGCTCACT
  AGTGAGCAAT GGATTGCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46871338	NES10700619	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29688490					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46871338	NES10700619	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108915774 () rs orientation: forward

Symbol	Name	Function Class
Eeig2	EEIG family member 2	within coordinates
Tssr35217	transcription start site region 35217	621 bp downstream
Tssr35218	transcription start site region 35218	660 bp downstream