rs29688493 SNP Detail

Summary

• ID
  rs29688493
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108915794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACTA TGCATTTTAC ACATAGAAAC
  R
  CCACTCCATT TCCTTAGTAT AGGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45413689	mCV23045779	ABI	CRAMUS_MOUSE	f	SNP	A	A	A				G		A
ss46871341	NES10700620	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G		A	A	A	A		G	A	A	G		A
ss135585927	ENSMUSSNP3261887	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A
ss320867296	CHEV_3_108811396	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29688493					SNP	A	A	A	A	A	G	G	A	A	A	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46871341	NES10700620	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108915794 () rs orientation: forward

Symbol	Name	Function Class
Eeig2	EEIG family member 2	within coordinates
Tssr35217	transcription start site region 35217	601 bp downstream
Tssr35218	transcription start site region 35218	640 bp downstream