rs29688532 SNP Detail

Summary

• ID
  rs29688532
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44385997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGCAGGA AGACATCCAA
  TGGAAAGTTG GAAGCAAGCT CTGCCATGGT GTCGTGGATA GAGTCTGGAT GGAGATCCAG
  AAGGCTGGGT CATCTCCCAG CTATCCCCTG CCAGCCATGT GATCTCTCAG CACCCTGCAA
  ACCCTCTCTC TGCAAAATGA CACTTGTATA GTGCTATGCA GAAGAGCACA TTGAGCAGTA
  Y
  ATAGCCATTT TCTGTGAGTG CTCCCTGCTC CCAGCGCAAT CCCAGGAAGG CTCCAGCCTT
  TAACACAGGA CTAAGGAGCA GCAGTTATGT TTCTAAGATG AGTACTGGTG GGACAATCGG
  GCAGCAGGCC AAGAGAAGAG GAAAGTGGCT ACAGCCTTTT CTGCAACCCT GCCTCTGACA
  GCCTCTCTTA GGTTTATCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46329734	mCV25082823	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss136396070	ENSMUSSNP1544887	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29688532					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44385997 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Gm22540	predicted gene, 22540	1711 bp downstream
Rr195027	regulatory region 195027	1197 bp distal
Rr195028	regulatory region 195028	1204 bp proximal
Rr203856	regulatory region 203856	1247 bp distal
Rr203857	regulatory region 203857	1243 bp proximal
Rr209142	regulatory region 209142	within coordinates
Rr209143	regulatory region 209143	1604 bp proximal