rs29688846 SNP Detail

Summary

• ID
  rs29688846
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56707128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGA AAAGAACAAA GCTCAGCAAG
  W
  TTCGAACTGA GAGCCTGTAT TTACC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46331299	mCV25255150	ABI	CRAMUS_MOUSE	f	SNP	T	T	T				A	T
ss47713034	NES11323744	PERLEGEN	MM_PANEL2	f	SNP	T		T	A	A	T		T	T	A		T	T	T		T
ss136515344	ENSMUSSNP6751073	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					T
ss322971065	CHEV_9_56647651	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29688846					SNP	T	T	T	A	A	T	A	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47713034	NES11323744	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56707128 () rs orientation: forward

Symbol	Name	Function Class
Gm31586	predicted gene, 31586	1437 bp downstream
Gm47235	predicted gene, 47235	within coordinates
Rr679507	regulatory region 679507	1612 bp distal