rs29689142 SNP Detail

Summary

• ID
  rs29689142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108916900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATATCATTA GATACCACTG
  TCTGGGCCTT CTAGAAAGGC ACAGTAAGAG AGGGCATGTG GGGACTGTCC TTTTACCCTC
  TCTCTATTCC TTTCATGACA GTCTGAAAAC TGTCATGACA ATGGTTTTGA ATGTCAGAAG
  CCATGTTGGA CCTTGAGGCT ACCTACATGA AAAACTGCCT GGTGATAATA CAGAGAGAGA
  Y
  GGAAGCCTGG GCTGTCCCCA TTCACACTTT AATATTTAAA ATGCTTGTTT TAGGGTTCAT
  CTATGTAGGT GAGCTAACCT CTAACACACC CGAAGTCTGA TCACTCCCAC ACTCAGAAAC
  CTGAGTCCCG GTACCCTTCC CATGTGGAGT GTGCTCTCAG AATCCAGATG CAGGGTCACT
  GTGTCCTAGC ACTTGGGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46871350	NES10700553	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29689142					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46871350	NES10700553	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108916900 () rs orientation: forward

Symbol	Name	Function Class
Eeig2	EEIG family member 2	within coordinates
Rr583368	regulatory region 583368	979 bp proximal
Tssr35217	transcription start site region 35217	503 bp upstream
Tssr35218	transcription start site region 35218	463 bp upstream