rs29689815 SNP Detail

Summary

• ID
  rs29689815
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:21083001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCAGAGA AACACAATAC
  AAAAATGAAG CCTGGAATCA GCTATTCCCC ATAACACCAC AGAATTCTGT GGTCACCAAC
  TCACCTACAA AGACTTGCAT TCTCCACAAA CAGGATACCT TAGGCCCTGC TTCAAAAGTA
  CAAAGAAACT CTCAAGAGAC GAGGAATAAC CCACCCTGTT TGCAGACAAC CTGTTAGAGT
  K
  CGGGAGATAA CTTCTCTCCT GTAGCTGATC TGTCTGTCCA ACCATAAAAC ATCCCACTTT
  CAGGCCACAT GTGCTTTATT GTTGTTTACG TTTGTCAAGG CGACACATGT CTCCTACCTT
  GTAGATTTCT GCCCTTTGTG TAGTTTATCT ACTTCAAAGT GAGGAGGGGT AGTGAACCTT
  TTCCCTTTAG GAGACCTTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46870853	NES10954859	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs29689815					SNP	G	G	G	G	G	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46870853	NES10954859	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:21083001 () rs orientation: forward

Symbol	Name	Function Class
4930453H23Rik	RIKEN cDNA 4930453H23 gene	within coordinates
Rr394834	regulatory region 394834	532 bp downstream