rs29689816 SNP Detail

Summary

• ID
  rs29689816
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28611641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAAAGTG TTTTGTTATA
  CCAGAGCCCC AGCCATCTTT CATAGGATTA CAGGCACACG CTAGCACACC TGGCTTTCTA
  CACGAGTGCT AGGGTTCTGA ACTCAGTTCT CGTGCTTGAA TGACAAGCAC TGTAGCGACC
  ACACCACCCA CCCGGCCTCT CTCTGAGATC TTCTTTTGAG TTACCCCTGA TCCCTAGGTC
  Y
  TTCTGGCTAG ATACTTTTTA AAAATGCATG CCACAGCTTG GTAGGTGACA TTCTGTATGC
  CACCATTGAT CTTGGACTTG AGGCTTGGCT ACCTGCTGTC TATACAGCAG CTTGTTAACC
  CTATCCTCGA GGCAGGGAGC TATTAGCCAA AATGGAGCCC AAGTAATGGC ACGAAAATGA
  TGTGATTTAC GACTGCAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46870854	NES10803729	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29689816					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46870854	NES10803729	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28611641 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr574598	regulatory region 574598			998 bp distal
Rr574599	regulatory region 574599			503 bp proximal
Tnik	TRAF2 and NCK interacting kinase			Intron
				Noncoding-Transcript-Variant
Tssr28651	transcription start site region 28651			1663 bp upstream