rs29689906 SNP Detail

Summary

• ID
  rs29689906
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108819273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGGGCGTT CGAGCTAAGG
  CCGTGGCCAA TCAGAGCCGC CCGTGTGTGC AGGCTATTCC TCTTCCTGGT TGCGCGAGGT
  CGTTGCGTGT TGGCTCGGCT CCGGTGGTCT GTGTGCCGGG CTGGTGGCTT CCTCCTGGGA
  CTTTGGCCCA GGGGGAAGGG GGTCTGGACA CAGTTGCTAT GTTTTAGAGT TTGCATCCGT
  W
  GCTTGATTTT TCTCGAGGCA GGAAGAGGGT CTCGTGACAC TTGTGTTCTG GACGGATGCG
  TGACTGCTCC TGCGGAGCGG TCGAAGTCTC ATGAGTTAAT TTTGTTAGAT TCTCCAGAAA
  GGACTAGAGT CAGGGAATTG ACTCCGATAG AGTCCTTGAG GCTTTCGCAG AGGTAATAGT
  GTCCTACCGG AAGTCGTAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46870474	NES10705606	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29689906					SNP	T	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46870474	NES10705606	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108819273 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13711	CpG island 13711	within coordinates
Gm56806	predicted gene, 56806	within coordinates
Prpf38b	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	230 bp upstream
Rr77092	regulatory region 77092	within coordinates
Rr397945	regulatory region 397945	87 bp downstream
Tssr31269	transcription start site region 31269	133 bp downstream
Tssr31270	transcription start site region 31270	101 bp downstream
Tssr31271	transcription start site region 31271	456 bp upstream
Tssr35202	transcription start site region 35202	465 bp upstream
Tssr35203	transcription start site region 35203	273 bp upstream
Tssr35204	transcription start site region 35204	211 bp upstream