rs29689909 SNP Detail

Summary

• ID
  rs29689909
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108819436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGACACAG TTGCTATGTT
  TTAGAGTTTG CATCCGTTGC TTGATTTTTC TCGAGGCAGG AAGAGGGTCT CGTGACACTT
  GTGTTCTGGA CGGATGCGTG ACTGCTCCTG CGGAGCGGTC GAAGTCTCAT GAGTTAATTT
  TGTTAGATTC TCCAGAAAGG ACTAGAGTCA GGGAATTGAC TCCGATAGAG TCCTTGAGGC
  K
  TTCGCAGAGG TAATAGTGTC CTACCGGAAG TCGTAGACGG CCCCAAATTT TTTTTCTCCT
  AAGATTAGGA TAATATTTTA ACTGGGTTGT GAGCTTTAAA GAAAGTACTC TCAACTGGGT
  GTGGTGGCGC CCGCTTTATT TCCAGTGCTG GGGAGGAAGG GGCAGACGGG TCTGTGATTC
  TGAAGCCAAG TTCCATAGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
ss46870477	NES10705607	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
rs29689909					SNP	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46870477	NES10705607	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108819436 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13711	CpG island 13711	70 bp distal
Gm56806	predicted gene, 56806	within coordinates
Prpf38b	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	393 bp upstream
Rr397945	regulatory region 397945	250 bp downstream
Tssr31269	transcription start site region 31269	296 bp downstream
Tssr31270	transcription start site region 31270	264 bp downstream
Tssr31271	transcription start site region 31271	293 bp upstream
Tssr35202	transcription start site region 35202	628 bp upstream
Tssr35203	transcription start site region 35203	436 bp upstream
Tssr35204	transcription start site region 35204	374 bp upstream