rs29689912 SNP Detail

Summary

• ID
  rs29689912
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108820026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATGGAGAAA AGGTGGGAAA GTAATCAGGG TATCTGTTCT
  CAAAGGTACT AATAATTTAA GATTAATAGT GTTTGAGAGT TAAGAGGCTG CTGGAGCCTT
  K
  GACCATCATC TACTATTTAC CATCTAATAA GCCTGATTTG AGCAAAGAAT GGCTTAAGCA
  TAGAAAGCAA AATCAGGCTT AGAGATGGAA AATAGCACAG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss46870480	NES10705403	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs29689912					SNP	T	T	T	T	G	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46870480	NES10705403	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108820026 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13711	CpG island 13711	660 bp distal
Gm56806	predicted gene, 56806	347 bp downstream
Prpf38b	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	983 bp upstream
Rr77092	regulatory region 77092	25 bp distal
Rr397945	regulatory region 397945	840 bp downstream
Tssr31269	transcription start site region 31269	886 bp downstream
Tssr31270	transcription start site region 31270	854 bp downstream
Tssr31271	transcription start site region 31271	288 bp downstream
Tssr35202	transcription start site region 35202	1218 bp upstream
Tssr35203	transcription start site region 35203	1026 bp upstream
Tssr35204	transcription start site region 35204	964 bp upstream