rs29690005 SNP Detail

Summary

• ID
  rs29690005
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108916955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGGGGAC TGTCCTTTTA
  CCCTCTCTCT ATTCCTTTCA TGACAGTCTG AAAACTGTCA TGACAATGGT TTTGAATGTC
  AGAAGCCATG TTGGACCTTG AGGCTACCTA CATGAAAAAC TGCCTGGTGA TAATACAGAG
  AGAGATGGAA GCCTGGGCTG TCCCCATTCA CACTTTAATA TTTAAAATGC TTGTTTTAGG
  K
  TTCATCTATG TAGGTGAGCT AACCTCTAAC ACACCCGAAG TCTGATCACT CCCACACTCA
  GAAACCTGAG TCCCGGTACC CTTCCCATGT GGAGTGTGCT CTCAGAATCC AGATGCAGGG
  TCACTGTGTC CTAGCACTTG GGAGGCTAAG CGAGAAGAGC ATGAGCCGAA GGCCAGTCTG
  TGCTACATAG CAATCAATAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46871353	NES10700555	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29690005					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46871353	NES10700555	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108916955 () rs orientation: forward

Symbol	Name	Function Class
Eeig2	EEIG family member 2	within coordinates
Rr583368	regulatory region 583368	924 bp proximal
Tssr35217	transcription start site region 35217	558 bp upstream
Tssr35218	transcription start site region 35218	518 bp upstream