rs29690138 SNP Detail

Summary

• ID
  rs29690138
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:67738438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCAGGCGCA GCGTGCAACC CCCGCGGCCC AGAGCCACGC
  TGGCTTCAGC TTGCAGGCGC TCGGGATCCG GGCTGCTGGG GACCGGGGGC GCGCAGGAGG
  Y
  GGCGCGCTCG TGCTCGTCGC CGCGGCACGG GGGGCGCGCG CTGGCCAGAC GTCGAGGGGC
  TCGAAGTGCG CGGCTCAGCA GCTTGCCCGG GGAGCGTAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss46330734	mCV25294846	ABI	CRAMUS_MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs29690138					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:67738438 () rs orientation: forward

Symbol	Name	Function Class
C2cd4a	C2 calcium-dependent domain containing 4A	within coordinates
Cpgi21983	CpG island 21983	within coordinates
Rr206662	regulatory region 206662	within coordinates
Tssr90357	transcription start site region 90357	1169 bp downstream