rs29690818 SNP Detail

Summary

• ID
  rs29690818
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108820260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATTTGAGC AAAGAATGGC
  TTAAGCATAG AAAGCAAAAT CAGGCTTAGA GATGGAAAAT AGCACAGTTG GCAAGAAGCT
  GGGAGCTGTG CTTCGTGGGG AGTAGTGGCA ATAAAATGTC TGTAATGTGT GGATGAAACA
  TTAGGAACTT AATGCTTACC AAAGGCTACC CCACATCCTT ATAGTGTGTG TGTATTTAAA
  Y
  CAGGCTAGGT TGGTTTTGAT GGCTACGTCT GAAAGGAAAT TTACATTCCA GAGACTGAGG
  CAGAACAATC AAGAGGCCAA GACTAGACTG GTATAATAAT CTGACTTAAA AAAAAATCAG
  GCTATTGGTG TAGTTTAATG GTAGACGAGG TGCCTAGCTA GCATGGGCAA CGTTGGTTTA
  ATCCCAACAG AAACGTGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss46870486	NES10705405	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs29690818					SNP	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46870486	NES10705405	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108820260 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13711	CpG island 13711	894 bp distal
Gm56806	predicted gene, 56806	581 bp downstream
Prpf38b	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	1217 bp upstream
Rr77092	regulatory region 77092	259 bp distal
Rr397945	regulatory region 397945	1074 bp downstream
Tssr31269	transcription start site region 31269	1120 bp downstream
Tssr31270	transcription start site region 31270	1088 bp downstream
Tssr31271	transcription start site region 31271	522 bp downstream
Tssr35202	transcription start site region 35202	1452 bp upstream
Tssr35203	transcription start site region 35203	1260 bp upstream
Tssr35204	transcription start site region 35204	1198 bp upstream