rs29691674 SNP Detail

Summary

• ID
  rs29691674
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108820595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATGGTAG ACGAGGTGCC
  TAGCTAGCAT GGGCAACGTT GGTTTAATCC CAACAGAAAC GTGTTTTCCT GTGCTCATTC
  ATGGATATGA GCATTAGGGG CTGAGGATGT TCCTCAAAGG TAGAGACTTC ATTAGCAAGC
  AAGAGTTTCA GCCCTATCAC TGGAAAAAAG AAAAATAGTT CATATGCATA ATTTTAAATA
  Y
  GACCTTGACG TCTACTTTGT ATTGCTTGCA TTATTTCTGG CTTCAGTCCA TTCTTCAGCA
  ATGGCCAGAA TAATTCCATT AGTGCTCCTC TGCTCCTGAA TGCCATGAGG TGAGCAGCCT
  GCCGTGCGAA TCGCCAAACT CCAATCGTTG GTCGCATACT GTCGTCCTTT CCTGGAAACT
  TTTGGGTTCG GAAGTTTCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ
ss46870492	NES10705407	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ
rs29691674					SNP	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46870492	NES10705407	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108820595 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13711	CpG island 13711	1229 bp distal
Gm56806	predicted gene, 56806	916 bp downstream
Prpf38b	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	1552 bp upstream
Rr77092	regulatory region 77092	594 bp distal
Rr397945	regulatory region 397945	1409 bp downstream
Tssr31269	transcription start site region 31269	1455 bp downstream
Tssr31270	transcription start site region 31270	1423 bp downstream
Tssr31271	transcription start site region 31271	857 bp downstream
Tssr35202	transcription start site region 35202	1787 bp upstream
Tssr35203	transcription start site region 35203	1595 bp upstream
Tssr35204	transcription start site region 35204	1533 bp upstream