rs29691683 SNP Detail

Summary

• ID
  rs29691683
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108821056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCACTGG GGGGGGGAGG
  GATGGGCAAT GAGTAGAAAC CAGTTCACCC TGATGCTGAC TCCTGTTGAT CAGTCCTCAG
  AGGGAAGTCA GTTCCATATG CAGTCCTGCA TAGGAATCGA AAATCAGCAT TTTGCAAGTG
  ACGAAGGGCT CCTTGCTGAA GTATCCAGGT TCTTGTATCC TACCTCCAAG AATCTGACCA
  K
  TGACACGTGG TTGAAATAGA AATAGAATAT TAGAAAGGGC AAGCCCTTTC TCTTAATGGG
  AGTGGACTGG TGAGCTGAGA GAAAGTTCCC AAATTGCTCG GCCATGAGTG ACTGTGACAC
  TTTGTAGGAC AATTACATAC TAGCTGTCAT TTTGGGGTTC TATTTGACTG ACTTTTGTCA
  CACATGCTCC TTTTGCTGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss46870501	NES10705410	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs29691683					SNP	T	T	T	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46870501	NES10705410	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108821056 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13711	CpG island 13711	1690 bp distal
Gm56806	predicted gene, 56806	1377 bp downstream
Rr77092	regulatory region 77092	1055 bp distal
Rr397945	regulatory region 397945	1870 bp downstream
Tssr31269	transcription start site region 31269	1916 bp downstream
Tssr31270	transcription start site region 31270	1884 bp downstream
Tssr31271	transcription start site region 31271	1318 bp downstream
Tssr35204	transcription start site region 35204	1994 bp upstream