rs29692686 SNP Detail

Summary

• ID
  rs29692686
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108821156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAG AGAAAGTTCC CAAATTGCTC
  K
  GCCATGAGTG ACTGTGACAC TTTGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46870504	NES10705411	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	G	G	G	G		G	G	G		G
ss320867057	CHEV_3_108716758	CHEVERUD	SCREENING_POP	f	SNP									T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs29692686					SNP	G	G	G	T	G	G	G	G	T	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46870504	NES10705411	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108821156 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13711	CpG island 13711	1790 bp distal
Gm56806	predicted gene, 56806	1477 bp downstream
Rr77092	regulatory region 77092	1155 bp distal
Rr397945	regulatory region 397945	1970 bp downstream
Tssr31270	transcription start site region 31270	1984 bp downstream
Tssr31271	transcription start site region 31271	1418 bp downstream