rs29693016 SNP Detail

Summary

• ID
  rs29693016
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:21226463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTTTTTA TAGCAATTGG
  ACCTTTGAGA GTTCTTTCTC TTTTAGTTTG GAAGAGCCTT CATAGAAGGA GCCCTGGGTA
  AGAGATAAGG ATTTTTTTTT GGGGGGGGCG GCTTACAGGA AAAACAGGGA AGCAACTGGC
  AGGACACAAG TAAAATAGTA TTCTATGAAA GAGAGTAAGG AAGCCCTCTT GGATTTGGGG
  Y
  GCTCAAGAGA AAGGTAGGTA CAGATTTCTA AAGAGCTAGC AGTTTAGTTG TAGAATCAGG
  TTTGTAAATA GACATTTTGT ATATAGTTAA GAAGGTAAAA TTACCTCACA GAGCTAGCAG
  ATTTTTAATC TCCATTTATG CCTCTCCTGT CTTCATTAGC ATACATATTA GATAATTTAA
  ATGGATATGC ATCGCAAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46871876	NES10953089	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29693016					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46871876	NES10953089	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:21226463 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22654	CpG island 22654	568 bp proximal
Gm5124	predicted pseudogene 5124	716 bp upstream
Rr8526	regulatory region 8526	138 bp proximal
Tssr160702	transcription start site region 160702	610 bp upstream
Tssr160703	transcription start site region 160703	632 bp upstream
Tssr160704	transcription start site region 160704	680 bp upstream