rs29693525 SNP Detail

Summary

• ID
  rs29693525
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:21349411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCCTTG TTTTACTGAA
  CTTTATACTT ATGTACCTAA ATACTAAGGA CAAAGATATA TATTCCTCTG CTTGCAGCTT
  GGGATACACT AATGCTCACT ATGGTACTAC CAATGCACCA TGCCCTCTTT CCAGGATCCA
  TGGGAATCCT TGTAATTGCA CACCTCTTTT TGGTGTTGTG GATTACCTGG TTATCGACAC
  W
  AACTGCAGAA AATTTCACAA TTCCATATTT CTCTTCTCTG ATCTCCATTT TGCTAATACA
  TTTAAGAACA CTTTCCCTTG CATAGCAATC CTTCCAACTT TCTTCTTTGG CGTTTTTGCA
  ATAGCTTATT AACTGTCAGC AGTGACTATT GTCTGCAAAT GCCGTATGTA TTCCTTTTGC
  TCAGAGAATG GTGAGACAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46872443	NES10965426	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29693525					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46872443	NES10965426	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:21349411 () rs orientation: forward

Symbol	Name	Function Class
Agtr2	angiotensin II receptor, type 2	1452 bp upstream
Rr3793	regulatory region 3793	1411 bp distal
Rr8527	regulatory region 8527	1589 bp proximal
Tssr160705	transcription start site region 160705	1360 bp upstream
Tssr160706	transcription start site region 160706	1389 bp upstream
Tssr160707	transcription start site region 160707	1435 bp upstream