rs29693531 SNP Detail

Summary

• ID
  rs29693531
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:21350075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTCTCAG ATGACACGAA
  GAAGGAAAGT CATGTGACTC CACTCAGAGA AGTGAGATGC GGCAGAAATT AGATTGTGAA
  GCCCTTCAGA GGCCATTCCT TACTTTTTGC TATGGCGCTC TCTGTTGATC TATTGAGGAC
  ACAGTAACGT AGCACAGTGT TAGGTGCGAA GCATTTGCTA TCAGCTGGTA CTGTACAATG
  M
  CATCACCTCT TATGGACTGT ATCCATTTTT TTCTTGCTGT TGCTGGATGG TATGAAGGTG
  ATCATTCTTC CAGAGAAAAG GAAAAACAGT CATAACCATA CCAGCAGCCG CAATAGCAGC
  AATCTATAAT AGCAGCAATC TATAATAGCA GCCTAATCGT TTTCTACCTT GTCTGCTATA
  TATTTGAGCT ACAGTTGTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46872449	NES10965379	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29693531					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46872449	NES10965379	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:21350075 () rs orientation: forward

Symbol	Name	Function Class
Agtr2	angiotensin II receptor, type 2	788 bp upstream
Rr8527	regulatory region 8527	925 bp proximal
Tssr160705	transcription start site region 160705	696 bp upstream
Tssr160706	transcription start site region 160706	725 bp upstream
Tssr160707	transcription start site region 160707	771 bp upstream