rs29693711 SNP Detail

Summary

• ID
  rs29693711
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108793489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGAACAA AGTCTCCACT
  GTTCATTGGC CAGATACTTC TGGAACATCA TCCAAGAGTA TCTTGTCACA GAAAGAAAAT
  CATGCTGATC ATATATCCTG GGGAAACCTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTTTCTG GGGGAGGGGC GCTGGTGGCC TTTTGCCTGG TGAAGTTAAT TCTGCAGGAA
  K
  AGCAGATGCC CCTTCAGGCC CCTCAAAACA AAAGGCCCCA GTAGGGTTTC CCTCTCTCAC
  CACATATCTC TCATCTGCCA GCTCCCCCTC CCCCCTCCCC TCCCCGAGTC ATTTCCCTGT
  GGTCTGTGTG TCCTTTCTTC TCCTTTTCTG GTGTCTCTCA ACGCCTTCTG TTTCCTCTGT
  CCCACAGTTT ATCTTATCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss46870219	NES10706580	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	G	T	T	G	T	T		G	G
ss320867038	CHEV_3_108689091	CHEVERUD	SCREENING_POP	f	SNP										G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs29693711					SNP	T	T	T	G	T	T	G	T	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46870219	NES10706580	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108793489 () rs orientation: forward

Symbol	Name	Function Class
Fndc7	fibronectin type III domain containing 7	Intron
Rr583339	regulatory region 583339	within coordinates