rs29694384 SNP Detail

Summary

• ID
  rs29694384
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:21351572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGCTAGT TGAAAGAAAA
  CAGCAGCCTT CCCACCTGAA CGCTGTTGTT AATGCTGGAA AGTAATGACT ATTCAGTTCT
  GTTAAATTGA AAAGATAGCA AAGAAAAAGC AGTAAAACTA TATCATAATT AGTCACTAAT
  GTCTAATTCT GATTTAATTG AGCCTCCAAA CCCATCTCTG TCTGCCCTTG ACTCGGGTTT
  R
  GTGTTTTTGT TTTCTTTATC TTCTATTTAA ACTGAAAATA GATGTTTCTT ATGAAACAGA
  TCAGATTCAA ATATCCATAT TGAAAACTGG CATTGACTAT TAAAATTTTT AGGTAAAAGC
  TTTAAGAAAT TCATCTATAT CTTTTTGTTG TTGTTAAAGC AAAGGGAAAA TAAATACATT
  ATTTTTAATT AGCAAAACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46872452	NES10965380	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs29694384					SNP	A	A	A	A	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46872452	NES10965380	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:21351572 () rs orientation: forward

Symbol	Name	Function Class
Agtr2	angiotensin II receptor, type 2	within coordinates
Rr8527	regulatory region 8527	371 bp distal
Rr9669	regulatory region 9669	1629 bp proximal
Tssr160705	transcription start site region 160705	786 bp downstream
Tssr160706	transcription start site region 160706	760 bp downstream
Tssr160707	transcription start site region 160707	695 bp downstream
Tssr160708	transcription start site region 160708	1976 bp upstream