rs29694387 SNP Detail

Summary

• ID
  rs29694387
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:21354197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTAAGTT GTGTTCCTTT
  TCCATTTCAC TCAAGTATAG CTTTTGTACT TATTCTACAG CTACACACTG AGCAGATCTA
  GAATGTAGAT TAAATCACAC ATCTGTCTTA GCTTATTCTT GCAGTTATAG AAAGTACACT
  ATTTAGTAAA ACAGAACTGC AATGAAAAGT ATTTTAGTAT CCACAAAACT GAATATACAC
  W
  TTGAAAATTT TTCATCCATT TTGACTCTTG TTTATTCTAT TCTCTTCTGA TGATTTTTGA
  ATACAACAAC AAAACACTGT ATTATGACAC TACGTAAAGG TCACTTTTTA AATTTTTAAC
  CTTTTGAACA TGGTGCTTTG ATATATTCAA TGATGACTTG AGTTTAATTA TTCATGCTTT
  TGTTCTGGGC TTCGTCCCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46872455	NES10965381	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29694387					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46872455	NES10965381	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:21354197 () rs orientation: forward

Symbol	Name	Function Class
Agtr2	angiotensin II receptor, type 2	within coordinates
Rr9669	regulatory region 9669	597 bp distal
Tssr160708	transcription start site region 160708	623 bp downstream