rs29695081 SNP Detail

Summary

• ID
  rs29695081
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41494366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACC TCACACTGGG AGAGAAGGAC
  R
  AGGTGCTTTA CCTTGTCTTT GTTAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss46331974	mCV23037822	ABI	CRAMUS_MOUSE	f	SNP	A	A				G		A
ss61386148	NES16764676	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A		G	A	A		G		A
ss136358678	ENSMUSSNP4178265	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A						A
ss322927331	CHEV_9_41391153	CHEVERUD	SCREENING_POP	f	SNP										A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs29695081					SNP	A	A	A	A	A	G	G	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61386148	NES16764676	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41494366 () rs orientation: forward

Symbol	Name	Function Class
Gm28119	predicted gene 28119	218 bp downstream
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Mir125b-1	microRNA 125b-1	1068 bp downstream
Rr677062	regulatory region 677062	1719 bp distal
Rr677063	regulatory region 677063	1605 bp distal
Rr677064	regulatory region 677064	1457 bp distal
Rr677065	regulatory region 677065	1058 bp distal
Rr677066	regulatory region 677066	931 bp distal
Rr677067	regulatory region 677067	350 bp distal
Rr677068	regulatory region 677068	within coordinates
Rr677069	regulatory region 677069	1718 bp proximal
Tssr84523	transcription start site region 84523	1970 bp downstream
Tssr84524	transcription start site region 84524	1810 bp downstream
Tssr84525	transcription start site region 84525	1754 bp downstream
Tssr84526	transcription start site region 84526	1719 bp downstream
Tssr84527	transcription start site region 84527	1066 bp downstream
Tssr84528	transcription start site region 84528	28 bp downstream
Tssr84529	transcription start site region 84529	1341 bp upstream