rs29695302 SNP Detail

Summary

• ID
  rs29695302
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:65200916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAAACCCAT ATGGTGTTAG AGGCAGTACT CTTAAATTCG
  AGGTCAGCCT GGTCTACAGA GGGAGTTCTT GGACAGCCAA GGTTACACAG ACAAACCCTC
  R
  CTCAGAAAAC CAAAACAAAA ATCCACACAG GCAACTAGCC CCGACTGAAA ACTTTATCAT
  CACAAAGCTT GAAAGAGCAA GGAAAGCTAG CTCTATCCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46331378	mCV23534750	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	A
ss136566862	ENSMUSSNP5550031	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
ss322986418	CHEV_9_65141441	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29695302					SNP	A	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:65200916 () rs orientation: forward

Symbol	Name	Function Class
Clpx	caseinolytic mitochondrial matrix peptidase chaperone subunit	626 bp upstream
Cpgi21943	CpG island 21943	361 bp proximal
Rr206623	regulatory region 206623	within coordinates
Rr368805	regulatory region 368805	345 bp upstream
Tssr85679	transcription start site region 85679	523 bp upstream
Tssr85680	transcription start site region 85680	545 bp upstream
Tssr85681	transcription start site region 85681	641 bp upstream
Tssr85682	transcription start site region 85682	736 bp upstream
Tssr85683	transcription start site region 85683	761 bp upstream
Tssr85684	transcription start site region 85684	793 bp upstream
Tssr85685	transcription start site region 85685	806 bp upstream
Tssr85686	transcription start site region 85686	923 bp upstream