rs29696877 SNP Detail

Summary

• ID
  rs29696877
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37167110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTACAAGTCA TCAACTCTGT GTGACGTTGG GTTTCCTGCA
  GTGCTACCTG TCTTGAGCAG TTCTGTGCCC TGACACAAAG CAAATCCGGT GCTCTGTGTA
  W
  GTGAACGCAG TGGGACCACC GCGCTGACTC ATGATCTGCG GGCTCTCTTT GGGAGCCCTG
  GAAGTGTCTC AGGGAGGAAA ATGATCCCCA AACCCACCT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46332080	mCV24902303	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T
ss136309796	ENSMUSSNP1978187	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29696877					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37167110 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	227 bp distal
Gm48081	predicted gene, 48081	within coordinates
Rr676656	regulatory region 676656	411 bp distal
Rr676657	regulatory region 676657	306 bp distal
Rr676658	regulatory region 676658	87 bp distal
Rr676659	regulatory region 676659	within coordinates
Rr676660	regulatory region 676660	222 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	401 bp upstream
Tssr88821	transcription start site region 88821	450 bp upstream
Tssr88822	transcription start site region 88822	422 bp upstream
Tssr88823	transcription start site region 88823	395 bp upstream
Tssr88824	transcription start site region 88824	372 bp upstream
Tssr88825	transcription start site region 88825	353 bp upstream
Tssr88826	transcription start site region 88826	261 bp upstream
Tssr88827	transcription start site region 88827	179 bp upstream
Tssr88828	transcription start site region 88828	149 bp upstream
Tssr88829	transcription start site region 88829	131 bp upstream
Tssr88830	transcription start site region 88830	103 bp upstream
Tssr88831	transcription start site region 88831	70 bp upstream