rs29698267 SNP Detail

Summary

• ID
  rs29698267
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37167115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTCATCAAC TCTGTGTGAC GTTGGGTTTC CTGCAGTGCT
  ACCTGTCTTG AGCAGTTCTG TGCCCTGACA CAAAGCAAAT CCGGTGCTCT GTGTAAGTGA
  R
  CGCAGTGGGA CCACCGCGCT GACTCATGAT CTGCGGGCTC TCTTTGGGAG CCCTGGAAGT
  GTCTCAGGGA GGAAAATGAT CCCCAAACCC ACCTCTCAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46333339	mCV24902304	ABI	CRAMUS_MOUSE	f	SNP	A	A					A		G
ss50674828	NES14008193	PERLEGEN	MM_PANEL2	f	SNP		A	G	A	G	A		G	G	A	G	G	G	G
ss136309799	ENSMUSSNP5144645	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A							G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29698267					SNP	A	A	G	A	G	A	A	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50674828	NES14008193	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37167115 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	232 bp distal
Gm48081	predicted gene, 48081	within coordinates
Rr676656	regulatory region 676656	416 bp distal
Rr676657	regulatory region 676657	311 bp distal
Rr676658	regulatory region 676658	92 bp distal
Rr676659	regulatory region 676659	within coordinates
Rr676660	regulatory region 676660	217 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	406 bp upstream
Tssr88821	transcription start site region 88821	455 bp upstream
Tssr88822	transcription start site region 88822	427 bp upstream
Tssr88823	transcription start site region 88823	400 bp upstream
Tssr88824	transcription start site region 88824	377 bp upstream
Tssr88825	transcription start site region 88825	358 bp upstream
Tssr88826	transcription start site region 88826	266 bp upstream
Tssr88827	transcription start site region 88827	184 bp upstream
Tssr88828	transcription start site region 88828	154 bp upstream
Tssr88829	transcription start site region 88829	136 bp upstream
Tssr88830	transcription start site region 88830	108 bp upstream
Tssr88831	transcription start site region 88831	75 bp upstream