rs29698271 SNP Detail

Summary

• ID
  rs29698271
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50968706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTTCATA AGCTTTCTGA
  ATATTGTCCT TGTAAGAAAT CGGAGGCCTT TGCTTCTCCT TTTGCATTCT TGCCAGGTTT
  TTCCTGTGTC TTAGTAATAT ATTTCATTTT CTACCCATCC ACTCTCCTTG CTCCTCCCCA
  TTCGGTCCGG GGAGAATTCA TAGATGTCAT TGGTCACAAA TCCACTCTCC ATACTTGCCA
  R
  AGTCACAAAC CCACTTTCCG AAGGGTTCAC AGCAATGTTT TCATAGTCAC AAGACATGTC
  ATCAGGCATA GCTTCCCCAG AACACACCCG GAAGGAGATG TTCTTCAGGT CTGGCCGGGG
  CTCAGCTAAA TCAGCTTCAC TTTGTTTTCT GATGACATTG TAAACATCTA GGTTGGGGCT
  GTTTTCTTGG CGAGGAGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46333343	mCV24072357	ABI	CRAMUS_MOUSE	f	SNP	G	A					A		A
ss47710420	NES11307423	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A		G	A	A	A	A	A	A	A
ss136485306	ENSMUSSNP1328741	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A							A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29698271					SNP	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47710420	NES11307423	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50968706 () rs orientation: forward

Symbol	Name	Function Class
Gm32681	predicted gene, 32681	within coordinates
Layn	layilin	within coordinates
Tssr89523	transcription start site region 89523	946 bp upstream
Tssr89524	transcription start site region 89524	703 bp upstream
Tssr89525	transcription start site region 89525	410 bp upstream
Tssr89526	transcription start site region 89526	377 bp upstream
Tssr89527	transcription start site region 89527	321 bp upstream