rs29700015 SNP Detail

Summary

• ID
  rs29700015
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28772130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGTGAGT GGCAAGAAAT
  AGCCATCTCT GGAGTTTTAA CTGCTTGAGT TTTCTTTGCT TTGAGTGAGT TATCTGGTGA
  TTTAAATTCA AACAATTACA TAAACTCTTC TTTAGCTGGT GCTCCCTCTC CCCATTTGAC
  TTTCAGCTAG TGCTCCCACT TTCCATTTTA CCTTCTGACC TCAGAAGGAT CTTTGGAATC
  Y
  GGCACTTAAG ATATCTAAAA GGAAGTCTGT AAACCACCAT GTGGGTACAT TGTGATTGTA
  CAATTATTCT TCTGTGAAAT AGTTACATTT TCCATAATGG GATTTTAAAG CAAAGCCCAA
  AGTCACATAT TCCCCTACCC CTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGATGCA
  CATGTTCATG TGTGTGCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46873068	NES10834480	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29700015					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46873068	NES10834480	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28772130 () rs orientation: forward

Symbol	Name	Function Class
1700112D23Rik	RIKEN cDNA 1700112D23 gene	within coordinates
D3Mit268	DNA segment, Chr 3, Massachusetts Institute of Technology 268	99 bp proximal
Slc2a2	solute carrier family 2 (facilitated glucose transporter), member 2	within coordinates