rs29701677 SNP Detail

Summary

• ID
  rs29701677
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107466115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCA GTCTTCAGCC CTGGAGAGAG
  Y
  TCACAGGCCG TCTCTCTGTT CCTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46333573	mCV22576762	ABI	CRAMUS_MOUSE	f	SNP		T	T					C
ss47777689	NES11985388	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	C	T	C		T	T	T		T
ss136948622	ENSMUSSNP978137	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
ss323191765	CHEV_9_107491247	CHEVERUD	SCREENING_POP	f	SNP													T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29701677					SNP	T	T	T	T	T	T	T	C	T	C	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47777689	NES11985388	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107466115 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22297	CpG island 22297	628 bp distal
Gm16343	predicted gene 16343	1448 bp upstream
Gm68835	predicted gene, 68835	259 bp upstream
Hyal3	hyaluronoglucosaminidase 3	1557 bp downstream
Ifrd2	interferon-related developmental regulator 2	within coordinates
Rr401663	regulatory region 401663	1278 bp downstream
Rr686552	regulatory region 686552	1264 bp distal
Rr686553	regulatory region 686553	270 bp distal
Rr686554	regulatory region 686554	within coordinates
Rr686555	regulatory region 686555	1368 bp proximal
Tssr87008	transcription start site region 87008	1260 bp downstream
Tssr87009	transcription start site region 87009	1236 bp downstream
Tssr87010	transcription start site region 87010	1170 bp downstream
Tssr87011	transcription start site region 87011	1115 bp downstream
Tssr87012	transcription start site region 87012	1027 bp downstream