rs29708839 SNP Detail

Summary

• ID
  rs29708839
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:67999662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGTGGGCT TCCAGTCTAC AGGTAGCCCT GGGTCCTCAG
  ACCCGCTACC AGGAGAGACA CACATAATGG AAAATTTAGA CCTGAAAACT CTGCCATTAT
  R
  GTCATTCTTC TTTGTACTTC TACAGTGGAG CGCATTTGTG ATACATTAAT AACTTTGTCT
  TTCTGATTCC TACACTGTAC CATCTCCCAA ATACCACAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss47873859	NES11930130	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	A	G	G		G	G	G	G
ss147147189	ENSMUSSNP4081586	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					A
ss323351833	CHEV_10_67626580	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs29708839					SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873859	NES11930130	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:67999662 () rs orientation: forward

Symbol	Name	Function Class
Arid5b	AT-rich interaction domain 5B	within coordinates
Gm51770	predicted gene, 51770	within coordinates
Gm66190	predicted gene, 66190	within coordinates
Gm66212	predicted gene, 66212	984 bp downstream
Rr401964	regulatory region 401964	1517 bp upstream
Rr433213	regulatory region 433213	1284 bp proximal
Rr433214	regulatory region 433214	1587 bp proximal