rs29708983 SNP Detail

Summary

• ID
  rs29708983
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:67971027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAG CTGAAACACA GGTCAGCCAT
  Y
  AACTCTTATT GGATACTTCT GTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47873569	NES11931361	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	C		T	C	T	T		C
ss147146130	ENSMUSSNP1837947	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					C
ss323351592	CHEV_10_67597945	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29708983					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873569	NES11931361	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:67971027 () rs orientation: forward

Symbol	Name	Function Class
Arid5b	AT-rich interaction domain 5B	within coordinates
Cpgi1679	CpG island 1679	1246 bp proximal
Rr384864	regulatory region 384864	1002 bp upstream
Rr433196	regulatory region 433196	315 bp distal
Rr433197	regulatory region 433197	within coordinates
Rr433198	regulatory region 433198	1337 bp proximal
Rr433199	regulatory region 433199	1419 bp proximal
Tssr3230	transcription start site region 3230	1528 bp downstream
Tssr3231	transcription start site region 3231	1544 bp downstream
Tssr3232	transcription start site region 3232	1610 bp downstream
Tssr93877	transcription start site region 93877	1806 bp upstream
Tssr97989	transcription start site region 97989	71 bp downstream
Tssr97990	transcription start site region 97990	92 bp downstream
Tssr97991	transcription start site region 97991	1374 bp downstream
Tssr97992	transcription start site region 97992	1416 bp downstream
Tssr97993	transcription start site region 97993	1430 bp downstream
Tssr97994	transcription start site region 97994	1453 bp downstream
Tssr97995	transcription start site region 97995	1487 bp downstream
Tssr97996	transcription start site region 97996	1505 bp downstream
Tssr97997	transcription start site region 97997	1516 bp downstream
Tssr97998	transcription start site region 97998	1582 bp downstream