rs29709618 SNP Detail

Summary

• ID
  rs29709618
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:68000970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATATATATG AATTTCATAT ACATATACAA ATATATGCAT
  GTGAATATAT CTGAATATAT CTATTCATAA CAAATCCATG ATCCCAGCTC ACTGCCACAA
  S
  TGCTCATTAA CAACCACCAC AAACTCACAG TCAGTTCTGT GAGCTTTGAA CCAGTTCCAG
  AACCAGGGCT ACAGCAAGTG GCAGTTTGGC CTTTTCGCTT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47873869	NES11930004	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29709618					SNP	G	G	G	G	G	G	C	G	G	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873869	NES11930004	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:68000970 () rs orientation: forward

Symbol	Name	Function Class
Arid5b	AT-rich interaction domain 5B	within coordinates
Gm51770	predicted gene, 51770	within coordinates
Gm66190	predicted gene, 66190	within coordinates
Gm66212	predicted gene, 66212	within coordinates
Rr401964	regulatory region 401964	209 bp upstream
Rr433213	regulatory region 433213	within coordinates
Rr433214	regulatory region 433214	279 bp proximal