rs29709896 SNP Detail

Summary

• ID
  rs29709896
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:10376035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGGAATT TCCATGGACG
  TGTGCCAATG ACAGCTGGAA AGTAGACTTT GGGAAACGTA ACGATGGAAT AAACTGGTTC
  TAGTCTGAAA GTGGGGAGGG AGAACATACA GCCTGGCACG AAGCTGAGAA AACCCAGTAC
  ACAAAGAACG ACTAAACAAG AGGAACTTCT GGAGGGGAGC CCCAGAGGGT GAACTTCCAG
  S
  AGGTAAACAT GGCGACTTAA GAGTCCATGG TAAGGGTGTG ATGGTCAAAT CCACAGACAC
  GTATGACTCC CTTGGCTGGA AACAAGAGGA TCGAGGGTGC ACCCTAGGGA TGGTATCAGG
  CCATGGGAAG AAAGGGGACA AAGAAACAGA GAAGCAGACA GTAAATTTTC AAGGTGATTC
  TGAAAACAAG GGGGCAGAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49558843	NES12891537	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29709896					SNP	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49558843	NES12891537	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:10376035 () rs orientation: forward

Symbol	Name	Function Class
Gm38364	predicted gene, 38364	1749 bp downstream
Impa1	inositol (myo)-1(or 4)-monophosphatase 1	981 bp downstream