rs29709898 SNP Detail

Summary

• ID
  rs29709898
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:10375616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACATCCAAG TATGTGACCC AGTGACTTTG TGATTTAACT
  GCACTCAGTC ATTCCTAACC TTTCAATTCC CATGCAAATT ATAATTATCT TACCTGGGTC
  Y
  GCTGTTTTTA TGACTTCTTA CAGACAGATG CACTACCTAC GAGTGGGAAA TGTAGGCACA
  GCCTGCGTGC TAGGGGTAGG GCTCAGAAGA AAAAGAGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss49558845	NES12891535	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	C		T
ss320653397	CHEV_3_10310556	CHEVERUD	SCREENING_POP	f	SNP							C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29709898					SNP	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49558845	NES12891535	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:10375616 () rs orientation: forward

Symbol	Name	Function Class
Gm38364	predicted gene, 38364	1330 bp downstream
Impa1	inositol (myo)-1(or 4)-monophosphatase 1	1400 bp downstream