rs29710217 SNP Detail

Summary

• ID
  rs29710217
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:67971134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAAC TTTCCCAAGT GTGATTAATA
  K
  AAATAAAATG AGGATGATAA GGAAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47873573	NES11931365	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		T	G	T	T		G
ss147146140	ENSMUSSNP7172008	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss323351594	CHEV_10_67598052	CHEVERUD	SCREENING_POP	f	SNP								G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29710217					SNP	G	G	G	G	G	G	G	G	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873573	NES11931365	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:67971134 () rs orientation: forward

Symbol	Name	Function Class
Arid5b	AT-rich interaction domain 5B	within coordinates
Cpgi1679	CpG island 1679	1139 bp proximal
Rr384864	regulatory region 384864	895 bp upstream
Rr433196	regulatory region 433196	422 bp distal
Rr433197	regulatory region 433197	within coordinates
Rr433198	regulatory region 433198	1230 bp proximal
Rr433199	regulatory region 433199	1312 bp proximal
Tssr3230	transcription start site region 3230	1421 bp downstream
Tssr3231	transcription start site region 3231	1437 bp downstream
Tssr3232	transcription start site region 3232	1503 bp downstream
Tssr93877	transcription start site region 93877	1699 bp upstream
Tssr97989	transcription start site region 97989	20 bp upstream
Tssr97990	transcription start site region 97990	3 bp upstream
Tssr97991	transcription start site region 97991	1267 bp downstream
Tssr97992	transcription start site region 97992	1309 bp downstream
Tssr97993	transcription start site region 97993	1323 bp downstream
Tssr97994	transcription start site region 97994	1346 bp downstream
Tssr97995	transcription start site region 97995	1380 bp downstream
Tssr97996	transcription start site region 97996	1398 bp downstream
Tssr97997	transcription start site region 97997	1409 bp downstream
Tssr97998	transcription start site region 97998	1475 bp downstream
Tssr97999	transcription start site region 97999	1900 bp downstream