rs29710222 SNP Detail

Summary

• ID
  rs29710222
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:67972687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCCCTGGC TCGGGCTTCC TGACTGCGCC CAGCCTGTTT
  GGTGGCTCCT GACCTCTGGC TCTTTGGTGG GAGCTCAGAG CCCAGTTCCG AGAACTTGCT
  M
  GGTCCACAGC CTGGAGCCAG GGTGTGGACT GTTTTGTTTA AAGGACTTTG TGTAGCTCGG
  AAGCTTTTTC ACAATGACCC AAGTGCTCAG GCTTTAATGA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss47873581	NES11931374	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs29710222					SNP	C	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873581	NES11931374	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:67972687 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Arid5b	AT-rich interaction domain 5B			Intron
				mRNA-UTR
Rr384864	regulatory region 384864			within coordinates
Rr433196	regulatory region 433196			1975 bp distal
Rr433197	regulatory region 433197			242 bp distal
Rr433198	regulatory region 433198			302 bp distal
Rr433199	regulatory region 433199			within coordinates
Rr433200	regulatory region 433200			1322 bp proximal
Tssr3230	transcription start site region 3230			121 bp upstream
Tssr3231	transcription start site region 3231			100 bp upstream
Tssr3232	transcription start site region 3232			23 bp upstream
Tssr93877	transcription start site region 93877			146 bp upstream
Tssr93878	transcription start site region 93878			925 bp upstream
Tssr97989	transcription start site region 97989			1573 bp upstream
Tssr97990	transcription start site region 97990			1556 bp upstream
Tssr97991	transcription start site region 97991			245 bp upstream
Tssr97992	transcription start site region 97992			233 bp upstream
Tssr97993	transcription start site region 97993			219 bp upstream
Tssr97994	transcription start site region 97994			180 bp upstream
Tssr97995	transcription start site region 97995			161 bp upstream
Tssr97996	transcription start site region 97996			149 bp upstream
Tssr97997	transcription start site region 97997			135 bp upstream
Tssr97998	transcription start site region 97998			75 bp upstream
Tssr97999	transcription start site region 97999			347 bp downstream
Tssr98000	transcription start site region 98000			504 bp downstream