rs29714029 SNP Detail

Summary

• ID
  rs29714029
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12475560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAATTAAG TAAGTTGAGG
  GTGGGGTGGG GGTGGCAGAG TTACTCCGGG GAATACCAAA TGCAATGTTT TGCATCAGCC
  CGGTTTTGAA AGATAAGAGC GCCCCCTCGG CACTGCGCCC TGCCCACTGA ATCATTTACT
  ACCTCTAGTC CTGATGACTC AAACCAGAAC CAAGCCAGAA AATGAAACTA GAGTTTCCTG
  Y
  CTTTTACTTC CTACAGTTCC GCCAGGCTGT AGACAATAGG CACTCGCCAA ATCTCTTATT
  TTACCGGAGA AAAGAAAATT GCATCTCTCT TGGTTACACC CCTAAAAACC ACCCTAGACC
  CCTACCTAGT ATCTGTCACT AACTCATTTT ATTCAAATCC TCTGAGCCTT TAATTCTGTT
  CTGTGCAATC CAGGAAGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss39109310	mCV22708143	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss148681950	ENSMUSSNP3125305	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29714029					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12475560 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5278	CpG island 5278	280 bp proximal
Lgals8	lectin, galactose binding, soluble 8	within coordinates
Rr281011	regulatory region 281011	within coordinates
Rr369646	regulatory region 369646	within coordinates
Rr369647	regulatory region 369647	470 bp upstream
Tssr118345	transcription start site region 118345	within coordinates
Tssr121451	transcription start site region 121451	1553 bp upstream
Tssr121452	transcription start site region 121452	1397 bp upstream
Tssr121453	transcription start site region 121453	420 bp downstream
Tssr121454	transcription start site region 121454	731 bp downstream
Tssr121455	transcription start site region 121455	753 bp downstream
Tssr121456	transcription start site region 121456	859 bp downstream
Tssr121457	transcription start site region 121457	883 bp downstream