rs29715492 SNP Detail

Summary

• ID
  rs29715492
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84491469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTTATTCT GTGTTTGAGA CAGGGTCTCA TATAGCCTAG
  GCTGGCCTTG ATGGATGTCT GCCTCCTAAG AACTGGAATT TTAGACATGC TCCCCCATGT
  Y
  TGGCTTATTT AAAAATTTTT AGAAGCCTTA CAAGGTAAGT ACTGTTATTT CCATTTCATG
  CATGAGAAAA ATGAGTCTCT GAGAAGTTAG GTTACCTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45355199	mCV22809176	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss146833668	ENSMUSSNP1811056	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss320371854	CHEV_2_84501282	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29715492					SNP	C	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84491469 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Btbd18	BTB domain containing 18			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi11859	CpG island 11859			1706 bp distal
Gm28635	predicted gene 28635			Intron
Rr560294	regulatory region 560294			1624 bp distal
Rr560295	regulatory region 560295			514 bp distal
Rr560296	regulatory region 560296			639 bp distal
Rr560297	regulatory region 560297			504 bp distal
Rr560298	regulatory region 560298			1843 bp proximal
Rr560299	regulatory region 560299			1944 bp proximal