rs29716019 SNP Detail

Summary

• ID
  rs29716019
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180122326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTGTTGTG TTTAATTCAT AACTCGATCA TTTATTCCAA
  GTTGTGTTGG CCTTGGACTA CAGGCTCTCG GGAACTTCCC CAGAAGGAGC TCAAACTGAG
  W
  GCTTCCTCTC TGCCTCTGCT TCATCCCTCC CTCCCTCTTT CCTCCCTTGC TTTTCTCTCC
  CTTTTCCCTC CCTCCCTCCT CTCTATAATC GTGGCAGTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45354303	mCV25371980	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
ss148392649	ENSMUSSNP5098520	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320632264	CHEV_2_180215238	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29716019					SNP	A	A	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180122326 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12896	CpG island 12896	1936 bp proximal