rs29716170 SNP Detail

Summary

• ID
  rs29716170
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122295683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGTGCAA ATTCCCATTT
  TATCTGCTCC GGCACGCTCA TTCAACCCAG CTCCGGCTAA ATACAGGGGA AATCTCTTAA
  ATTATTATAT AACTTTCTGA GTTCAAGAAA GATAATTCAA AAGATAGGTA GTAGCAACCC
  TTACAGAATT CTCCCAACCT CTCTCTAAAA TGTAAAAGAG CATTAGCGCA CACAAGAAGC
  W
  CACACAAATT ACTTAATGTG CCACTCACAG TGGATTAACA TTTTTTTGGC TTATCTTGGG
  GGCTTCTTTT TTCCAAATAT TGTATCGTAG ATGCTTTATT GCAGTATTAT GAAATTTTGC
  CAGTGCTGGG AATTGAACCC AAGGTCTCAC ACATACTCGA CAAGCATTCT CACCACGGAG
  CCGTATATCT AGCTCTTCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45854091	mCV22536784	ABI	CRAMUS_MOUSE	f	SNP	A	T	T
ss149186860	ENSMUSSNP3085448	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		T		T
ss321668907	CHEV_5_122607629	CHEVERUD	SCREENING_POP	f	SNP				A		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs29716170					SNP	A	T	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122295683 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16545	CpG island 16545	128 bp proximal
Gm73495	predicted gene, 73495	within coordinates
Ppp1cc	protein phosphatase 1 catalytic subunit gamma	658 bp upstream
Rr124301	regulatory region 124301	within coordinates
Tssr48638	transcription start site region 48638	645 bp upstream