rs29716209 SNP Detail

Summary

• ID
  rs29716209
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:154579483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAA ATTGTATTCT TAAATCTAAA
  Y
  GCCTGCTTCT TGAGTTCTTC CTATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45354510	mCV25182897	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss148038405	ENSMUSSNP6227322	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C	C
ss320570994	CHEV_2_154563299	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29716209					SNP	T	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154579483 () rs orientation: forward

Symbol	Name	Function Class
Gm57835	predicted gene, 57835	within coordinates
Tssr26967	transcription start site region 26967	921 bp downstream