rs29716299 SNP Detail

Summary

• ID
  rs29716299
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14454108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAACAATGT AATTAAAGTT
  TTAATTACTA TGTCTGACAT ATAAGCCCCT AGCTTATATA AGCTATACCA AACCCAATAC
  CCTTTTATCC AAGATGTTGA AAACTAATCT CAAAATTCAC TGCTGTAAAG TTCGGTGGTT
  TTCCAAGGTA GTAGGTTATA AGATTACCTG CTCTTTCTCC TTTTGCATTC AAACTTGCTT
  M
  GTCTTCTGAA AAAGATGATT AGGCCAACTG TAAAACATAT ATGTTAAAAG AAGTCCCTGC
  CTACTCCTAA ACAGAATGTG TAATCTTGTA GGTTTTGCCT TTATAAGCCC TGTGCTAATA
  TGGCTAAATG CTGCATTTGG AGAGTAACCT CAGGTACAGT CCGAGAACCA AAGTACCCAG
  TATCTAAAGA AAGCCTGTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49561565	NES12895762	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29716299					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49561565	NES12895762	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14454108 () rs orientation: forward

Symbol	Name	Function Class
Rr66129	regulatory region 66129	893 bp proximal