rs29716466 SNP Detail

Summary

• ID
  rs29716466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152608717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGCTGGGA TGGTGATCTA
  GACTAGATGG ACACACACAG GCAAGGAACT TTCTGCCCAC CGTGCTCTCG CCGGCGCCCT
  CTACCGGCAA AACTCGGCAT CATCTCCTGA GTGCAGGTCC GACGTTGAAC TACAGGAGGC
  CCACCAGGAT GAGGAAAATA GCCCGTTTCT CTCTCTCCCC TCCCCCTCTC CTCTCCCCCT
  Y
  CGTCTCCCTT TCCCTCTCTC TCCCTCTCCC TCCCTCTCTC TCCTTCTCTG CCCCTCCCTC
  CCTATCAATC TATTTTATCT ATTTTGGCAG GGTCTTTCTA TTTATCTAAG CTGGCCTCAA
  ACTCTTGAAC CTCCTACCTC AGTCTTCTGA GCGTGGGTGT GCACTTGCAT CTGAGAGGCA
  GCAGAGTGCT AGCTGGTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45355602	mCV27575145	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss147974118	ENSMUSSNP6340838	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29716466					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152608717 () rs orientation: forward

Symbol	Name	Function Class
Cox4i2	cytochrome c oxidase subunit 4I2	1760 bp downstream
Cpgi12465	CpG island 12465	within coordinates
Rr567459	regulatory region 567459	1121 bp distal
Rr567460	regulatory region 567460	within coordinates
Rr567461	regulatory region 567461	109 bp distal
Rr567462	regulatory region 567462	698 bp proximal
Tssr26855	transcription start site region 26855	1423 bp upstream