rs29716622 SNP Detail

Summary

• ID
  rs29716622
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173054734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAAAGCT GAGGTGTGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAATA GCTCACACCA GCCAAGCCCA GAGCCTGTAC
  CACGTGCCAC AGGGCCACAT GCCCGCTCCA AATGGAGACG TGTGCACCTC TGTGAACTCC
  TTTCCCCATA AATTAAAGTA GCCCAGCATG GGGACAGACA TCTGTCATCC CCATATTTGG
  R
  AGGTGGAAGT AGGAAGATCA GGAGTTCAAG GTCATCTCAG CTACACGAGA TTATCTAGAA
  AGAAAGAAAG AAAGAAAGAA AGAAAGAAAG AAAGAGAGAG AGAGAGAAAG AACAACTACA
  GAAAGAAAGG AAAGAAAGAA TGAAGAAAGA AAAAGAAAGA AAGAAAGAAC AACAGAAAGA
  AAAGAAAGAA AGAAGGAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45355012	mCV22954099	ABI	CRAMUS_MOUSE	f	SNP	G		A
ss148330953	ENSMUSSNP467169	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320621751	CHEV_2_173038442	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29716622					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173054734 () rs orientation: forward

Symbol	Name	Function Class
Tssr27968	transcription start site region 27968	1132 bp upstream
Tssr27969	transcription start site region 27969	859 bp downstream
Tssr27970	transcription start site region 27970	973 bp downstream
Zbp1	Z-DNA binding protein 1	within coordinates