rs29716642 SNP Detail

Summary

• ID
  rs29716642
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164586670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAC CTAAAAAAAT AAAAGTGGAC
  R
  TTGGAACATG GAACAAAACT GGCAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45356606	mCV23594273	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss148231812	ENSMUSSNP588989	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs29716642					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164586670 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12667	CpG island 12667	827 bp proximal
Dnttip1	deoxynucleotidyltransferase, terminal, interacting protein 1	1265 bp upstream
Tssr21635	transcription start site region 21635	1229 bp upstream
Tssr21636	transcription start site region 21636	1278 bp upstream
Tssr27522	transcription start site region 27522	1642 bp upstream
Tssr27523	transcription start site region 27523	1626 bp upstream
Tssr27524	transcription start site region 27524	1603 bp upstream
Tssr27525	transcription start site region 27525	1569 bp upstream
Tssr27526	transcription start site region 27526	1539 bp upstream
Tssr27527	transcription start site region 27527	1146 bp downstream
Tssr27528	transcription start site region 27528	1166 bp downstream
Wfdc3	WAP four-disulfide core domain 3	within coordinates