rs29716668 SNP Detail

Summary

• ID
  rs29716668
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93643004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAAAAGT AAATAAACTA
  CGGAAGACTG ATTCACTATA TTACAGAATA TCTATAAAAC GGAGTGCTAC GCAGTGTTCA
  GAATTGTATA AAAAACAGCG ACGGGCTGGG GCGATGACTC AGTCAGTAAA GTGTTTGCTG
  AATAAGCATG AGGCCCTGAG TTCAAGTCTC AGCATCTACA CAAAAGCCAG GTACAGTGGC
  M
  TGTGCCTAGA ACCCCATGCC TGGGGAGGCA GAGACGGGAG GGAGGATCCC AGGGGCTCCA
  GATTCAGTGA GAGACCTGTC TCAAAAACTA ATTAATTAAT AATTAAGGTA GAGGGTGATA
  AAGACACCCA ACATCCACCT CTGAGCTTTG CATAGGCATT ATGTGTGTAT ATGAGCGTAT
  GTATATGTGT GTATGTGTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss45356392	mCV23861653	ABI	CRAMUS_MOUSE	f	SNP	C	C	A
ss320397103	CHEV_2_93652816	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs29716668					SNP	C	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93643004 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11950	CpG island 11950			811 bp proximal
Ext2	exostosin glycosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr561284	regulatory region 561284			580 bp distal
Rr561285	regulatory region 561285			718 bp proximal
Rr561286	regulatory region 561286			888 bp proximal