rs29717331 SNP Detail

Summary

• ID
  rs29717331
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:68152543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGGTGAG CATATTACCC
  ATCTCCCCCT GACTATCCTG AAGTCCCGTG TTGCATAGTT GCTGAACTAG GGAAACCAAG
  CCAACCTATG AGATCCATAG CCATGATAAA CTCTCATTAA CCCTCCATCG TTCTGGAAAG
  GAAAAAGAGG CTTAGTGAGG GAATCTAAGT TGGCTAAACT AGCCAGCGAG GAAGTGATCC
  Y
  GCTAGGATTA AAAGCTGTGT TCGGTACTTT CAAAATGATG ATGTTCTTGA GCCAGGGAAA
  TGGCTTGGGG GCTACGAGGG GTTCGTTGCT CTTTCAGAGG ACCAGTGGTC AGTTCCCAGC
  GTCCACATTG GGTGGATTCC AATTGCCTGT AACTCTAACC CTATGGACTA TAACTCTTCT
  TTCTGGCCTC CAAGGGCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47874621	NES11949769	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29717331					SNP	T	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47874621	NES11949769	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:68152543 () rs orientation: forward

Symbol	Name	Function Class
Gm47078	predicted gene, 47078	within coordinates