rs29717404 SNP Detail

Summary

• ID
  rs29717404
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:154032913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTGAGAGAC TGCAATCCGG GTGTTACACA CTTAGGATGT
  ATGTAACATG TGTTACATGT TACATGTTAC ATGTTAGGAT GTGCTCAGTA CATGGCTGAT
  R
  CTCGATACCT TGGGGAGGGT TTTCTAGAAT CTATGCTGCG GTGGCACTGT CAGGTGGCAC
  TCTGGCGCCA TCCAGTGCCT TCCTAGTCTC TCCGTCCTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45355613	mCV23868182	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss148023913	ENSMUSSNP7037498	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss320569693	CHEV_2_154016729	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29717404					SNP	G	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154032913 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	Intron
Rr567774	regulatory region 567774	165 bp distal
Rr567775	regulatory region 567775	within coordinates
Rr567776	regulatory region 567776	62 bp proximal
Rr567777	regulatory region 567777	1197 bp proximal
Tssr20971	transcription start site region 20971	234 bp downstream
Tssr20972	transcription start site region 20972	225 bp downstream
Tssr20973	transcription start site region 20973	211 bp downstream
Tssr20974	transcription start site region 20974	161 bp downstream
Tssr20975	transcription start site region 20975	136 bp downstream
Tssr20976	transcription start site region 20976	275 bp upstream