CTGAA AACTTCAGAC AGCCCCCCAC M GCAGTACAGG CAGGGGTCAG GGTGA M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
A/J |
C57BL/6J |
DBA/2J |
LG/J |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|---|
ss45355904 | mCV23728572 | ABI | CRAMUS_MOUSE | f | SNP | C | A | C | C | ||
ss147112294 | ENSMUSSNP3403529 | ENSEMBL | ENSEMBL_Sanger | f | SNP | C | A | C | |||
ss320437743 | CHEV_2_102292335 | CHEVERUD | SCREENING_POP | f | SNP | A | C | ||||
SNP Consensus Information | |||||||||||
SNP | Consensus Type | 129X1/SvJ |
A/J |
C57BL/6J |
DBA/2J |
LG/J |
SM/J |
||||
rs29717436 | SNP | C | A | C | C | A | C |
Location: Chr2:102282523 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi11976 | CpG island 11976 | within coordinates | ||||||
Fjx1 | four jointed box 1 | mRNA-UTR | ||||||
Rr561694 | regulatory region 561694 | 1418 bp distal | ||||||
Rr561695 | regulatory region 561695 | 834 bp distal | ||||||
Rr561696 | regulatory region 561696 | 311 bp proximal | ||||||
Rr561697 | regulatory region 561697 | 1265 bp proximal | ||||||
Rr561698 | regulatory region 561698 | 1392 bp proximal | ||||||
Tssr25397 | transcription start site region 25397 | 404 bp upstream | ||||||
Tssr25398 | transcription start site region 25398 | 363 bp upstream | ||||||
Tssr25399 | transcription start site region 25399 | 335 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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