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rs29717436 SNP Detail
Summary
  • ID
    rs29717436
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr2:102282523 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CTGAA AACTTCAGAC AGCCCCCCAC
    M
    GCAGTACAGG CAGGGGTCAG GGTGA                                      
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
ss45355904 mCV23728572 ABI CRAMUS_MOUSE f SNP C A C C
ss147112294 ENSMUSSNP3403529 ENSEMBL ENSEMBL_Sanger f SNP C A C
ss320437743 CHEV_2_102292335 CHEVERUD SCREENING_POP f SNP A C
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
rs29717436 SNP C A C C A C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:102282523 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi11976 CpG island 11976 within coordinates
Fjx1 four jointed box 1 mRNA-UTR
Rr561694 regulatory region 561694 1418 bp distal
Rr561695 regulatory region 561695 834 bp distal
Rr561696 regulatory region 561696 311 bp proximal
Rr561697 regulatory region 561697 1265 bp proximal
Rr561698 regulatory region 561698 1392 bp proximal
Tssr25397 transcription start site region 25397 404 bp upstream
Tssr25398 transcription start site region 25398 363 bp upstream
Tssr25399 transcription start site region 25399 335 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory